@inproceedings {johnson-spp-2008, title = {Simulation of DNA mobility in one-dimension using the bead-spring model}, booktitle = {Proceedings of the 26th Samahang Pisika ng Pilipinas Physics Congress}, year = {2008}, month = {22{\textendash}24 Oct 2008}, pages = {SPP-2008-138}, address = {University of the Phlippines Baguio, Baguio City}, abstract = {
This paper studies the one-dimensional motion of a DNA molecule through a microchannel with a single electric trap. The three particle molecule model uses three beads connected via harmonic springs in the presence of a Weeks-Chandler-Andersen repulsive potential and a Brownian force. Using the stochastic fourth order Runge-Kutta method, the spring constant is sought that allows motion through the microchannel without overlap between the three beads.
}, author = {Sarah Johnson and Cristine Villagonzalo} }